The algorithms and methods for predicting ensembles of transmembrane β-barrels with partiFold are described in:

• J. Waldispühl*, C.W. O'Donnell*, S. Devadas, P. Clote and B. Berger.
  Modeling Ensembles of Transmembrane β-barrel Proteins
  [abstract] [bibtex-entry]
  PROTEINS: Structure, Function and Bioinformatics, published online 14 Nov. 2007.
  doi:10.1002/prot.21788
  (* authors equally contributed)

This work is also based on the transFold framework for transmembrane β-barrel prediction, published under:

• J. Waldispühl, B. Berger, P. Clote and J.-M. Steyaert,
  Predicting Transmembrane β-barrels and Inter-strand Residue Interactions from Sequence.
  [abstract] [bibtex-entry]
  PROTEINS: Structure, Function and Bioinformatics, vol. 65, issue 1, p.61-74, 2006.
  doi:10.1002/prot.21046

If you find partiFold useful for your research, please cite these papers.